Introduction to Bioinformatic Distances | Installation | Examples | CosinusDistance | Dist2All | DistanceMatrix | Fractional Distances | Tfidf-distance | References
Package: BIDistances 0.1.3
BIDistances: Bioinformatic Distances
A selection of distances measures for bioinformatics data. Other important distance measures for bioinformatics data are selected from the R package 'parallelDist'. A special distance measure for the Gene Ontology is available.
Authors:
BIDistances_0.1.3.tar.gz
BIDistances_0.1.3.zip(r-4.7-x86_64)BIDistances_0.1.3.zip(r-4.6-x86_64)BIDistances_0.1.3.zip(r-4.5-x86_64)
BIDistances_0.1.3.tgz(r-4.6-x86_64)BIDistances_0.1.3.tgz(r-4.6-arm64)BIDistances_0.1.3.tgz(r-4.5-x86_64)BIDistances_0.1.3.tgz(r-4.5-arm64)
BIDistances_0.1.3.tar.gz(r-4.7-arm64)BIDistances_0.1.3.tar.gz(r-4.7-x86_64)BIDistances_0.1.3.tar.gz(r-4.6-arm64)BIDistances_0.1.3.tar.gz(r-4.6-x86_64)
BIDistances_0.1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
BIDistances/json (API)
| # Install 'BIDistances' in R: |
| install.packages('BIDistances', repos = c('https://quirinms.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- Hearingloss_N109 - Hearingloss data
- Hepta - Hepta introduced in [Ultsch, 2003]
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:626d9bd5c0. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 177 | ||
| linux-devel-x86_64 | OK | 174 | ||
| source / vignettes | OK | 259 | ||
| linux-release-arm64 | OK | 178 | ||
| linux-release-x86_64 | OK | 181 | ||
| macos-release-arm64 | OK | 161 | ||
| macos-release-x86_64 | OK | 326 | ||
| macos-oldrel-arm64 | OK | 142 | ||
| macos-oldrel-x86_64 | OK | 284 | ||
| windows-devel | OK | 182 | ||
| windows-release | OK | 172 | ||
| windows-oldrel | OK | 152 | ||
| wasm-release | OK | 182 |
Exports:CosinusDistanceDist2AllDistanceDistributionsDistanceMatrixfastPdistFractionalDistanceGiniDistjaccardMahalanobismsmdnearestSharedNeighborDistanceTfidf_distToroidDist2AllTransformSimilarity2MetricDistancetwedVariablePrecisionWassersteinDist
Dependencies:classcliclustercpp11DataVisualizationsdipteste1071farverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvnlmeparallelDistpermuteplyrpracmaproxyR6RColorBrewerRcppRcppArmadilloRcppParallelreshape2rlangS7scalesspstringistringrvctrsveganviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Cosine Distance | CosinusDistance |
| Distances to all data points | Dist2All |
| Distance Distribution | DistanceDistributions |
| Pairwise distance between pairs of objects | DistanceMatrix pdist |
| fastPdist | fastPdist |
| fastPdist | fastPdistC |
| Calculates fractional distances | FractionalDistance |
| GiniDist | GiniDist |
| Hearingloss data | Hearingloss_N109 |
| Hepta introduced in [Ultsch, 2003] | Hepta |
| Computes dissimilarity indices Jaccard | jaccard |
| Pairwise Squared Generalized Mahalanobis Distances | Mahalanobis |
| msmd | msmd |
| Nearest | nearest |
| Shared Neighbor Distance | SharedNeighborDistance |
| Term frequency-inverse document frequency distance | Tfidf_dist |
| Calculate toroid Euclidean Distances | ToroidDist2All |
| TransformSimilarity2MetricDistance | TransformSimilarity2MetricDistance |
| twed | twed |
| VariablePrecision | VariablePrecision |
| Wasserstein Distance | WassersteinDist |
